LOC115156689 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC115156689

Rap1 GTPase-GDP dissociation stimulator 1-like. (312 aa)

Predicted Functional Partners:

LOC115148789

0.706

RASL10B

0.706

ENSSTUP00000050161

0.706

ENSSTUP00000099278

0.706

dnal1

0.696

ENSSTUP00000026179

0.660

LOC115154124

0.660

LOC115165260

0.655

LOC115150994

0.655

LOC115168240

0.655

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSTUP00000026179	LOC115156689	ENSSTUP00000026179	ENSSTUP00000010506	annotation not available	Rap1 GTPase-GDP dissociation stimulator 1-like.	0.660
ENSSTUP00000050161	LOC115150994	ENSSTUP00000050161	ENSSTUP00000048771	RAS-like, family 10, member A.	Rho-related GTP-binding protein RhoA-D.	0.522
ENSSTUP00000050161	LOC115156689	ENSSTUP00000050161	ENSSTUP00000010506	RAS-like, family 10, member A.	Rap1 GTPase-GDP dissociation stimulator 1-like.	0.706
ENSSTUP00000050161	LOC115165260	ENSSTUP00000050161	ENSSTUP00000017503	RAS-like, family 10, member A.	Rho-related GTP-binding protein RhoA-C-like.	0.522
ENSSTUP00000050161	LOC115168240	ENSSTUP00000050161	ENSSTUP00000051105	RAS-like, family 10, member A.	Rho-related GTP-binding protein RhoA-C.	0.522
ENSSTUP00000099278	LOC115150994	ENSSTUP00000099278	ENSSTUP00000048771	RAS-like, family 10, member A.	Rho-related GTP-binding protein RhoA-D.	0.522
ENSSTUP00000099278	LOC115156689	ENSSTUP00000099278	ENSSTUP00000010506	RAS-like, family 10, member A.	Rap1 GTPase-GDP dissociation stimulator 1-like.	0.706
ENSSTUP00000099278	LOC115165260	ENSSTUP00000099278	ENSSTUP00000017503	RAS-like, family 10, member A.	Rho-related GTP-binding protein RhoA-C-like.	0.522
ENSSTUP00000099278	LOC115168240	ENSSTUP00000099278	ENSSTUP00000051105	RAS-like, family 10, member A.	Rho-related GTP-binding protein RhoA-C.	0.522
LOC115148789	LOC115150994	ENSSTUP00000007010	ENSSTUP00000048771	Ras-like protein family member 10B.	Rho-related GTP-binding protein RhoA-D.	0.522
LOC115148789	LOC115156689	ENSSTUP00000007010	ENSSTUP00000010506	Ras-like protein family member 10B.	Rap1 GTPase-GDP dissociation stimulator 1-like.	0.706
LOC115148789	LOC115165260	ENSSTUP00000007010	ENSSTUP00000017503	Ras-like protein family member 10B.	Rho-related GTP-binding protein RhoA-C-like.	0.522
LOC115148789	LOC115168240	ENSSTUP00000007010	ENSSTUP00000051105	Ras-like protein family member 10B.	Rho-related GTP-binding protein RhoA-C.	0.522
LOC115150994	ENSSTUP00000050161	ENSSTUP00000048771	ENSSTUP00000050161	Rho-related GTP-binding protein RhoA-D.	RAS-like, family 10, member A.	0.522
LOC115150994	ENSSTUP00000099278	ENSSTUP00000048771	ENSSTUP00000099278	Rho-related GTP-binding protein RhoA-D.	RAS-like, family 10, member A.	0.522
LOC115150994	LOC115148789	ENSSTUP00000048771	ENSSTUP00000007010	Rho-related GTP-binding protein RhoA-D.	Ras-like protein family member 10B.	0.522
LOC115150994	LOC115156689	ENSSTUP00000048771	ENSSTUP00000010506	Rho-related GTP-binding protein RhoA-D.	Rap1 GTPase-GDP dissociation stimulator 1-like.	0.655
LOC115150994	RASL10B	ENSSTUP00000048771	ENSSTUP00000007086	Rho-related GTP-binding protein RhoA-D.	RAS like family 10 member B.	0.522
LOC115150994	dnal1	ENSSTUP00000048771	ENSSTUP00000052450	Rho-related GTP-binding protein RhoA-D.	Dynein axonemal light chain 1.	0.656
LOC115154124	LOC115156689	ENSSTUP00000104197	ENSSTUP00000010506	Pleckstrin homology domain-containing family B member 1-like.	Rap1 GTPase-GDP dissociation stimulator 1-like.	0.660