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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115147602Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog. (237 aa)    
Predicted Functional Partners:
fancm
FA complementation group M.
    
 0.950
ENSSTUP00000051201
annotation not available
  
  
 
0.815
ENSSTUP00000053337
annotation not available
  
  
 
0.815
LOC115200813
Cell death-inducing p53-target protein 1 homolog.
  
 
0.762
LOC115171204
Cell death-inducing p53-target protein 1-like.
  
 
0.739
LOC115198868
Cell death-inducing p53-target protein 1-like.
  
 
0.738
ENSSTUP00000027962
annotation not available
  
 
0.734
LOC115207473
GDH/6PGL endoplasmic bifunctional protein-like.
   
 
 0.676
LOC115150953
GDH/6PGL endoplasmic bifunctional protein-like.
   
 
 0.676
DUT
Deoxyuridine triphosphatase.
    
 0.599
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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