Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
LOC115147602Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog. (237 aa)    
Predicted Functional Partners:
LOC115198644
Lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog.
     
  0.825
LOC115200813
Cell death-inducing p53-target protein 1 homolog.
  
 
0.817
fancm
FA complementation group M.
    
  0.804
ENSSTUP00000051201
annotation not available
     
  0.789
ENSSTUP00000053337
annotation not available
     
  0.789
LOC115198868
Cell death-inducing p53-target protein 1-like.
    
 0.787
ENSSTUP00000027962
annotation not available
    
 0.787
LOC115171204
Cell death-inducing p53-target protein 1-like.
    
 0.787
tsg101
Tumor susceptibility 101.
    
 
 0.764
ENSSTUP00000041670
NEDD4 like E3 ubiquitin protein ligase.
    
 
 0.743
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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