Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115168654Leucine-rich repeat transmembrane protein FLRT1-like. (706 aa)    
Predicted Functional Partners:
LOC115168677
Protein Daple-like.
    
 
 0.707
ENSSTUP00000090999
Coiled-coil domain containing 88B.
    
 
 0.707
ENSSTUP00000053291
E74-like factor 2a (ets domain transcription factor).
      
 0.673
ENSSTUP00000076830
E74-like factor 2a (ets domain transcription factor).
      
 0.673
ENSSTUP00000004813
Netrin g1a.
    
 0.660
LOC115170189
netrin-G1-like.
    
 0.660
LOC115195355
netrin-G1-like.
    
 0.660
LOC115157587
netrin-G1-like.
    
 0.660
LOC115205755
Elongation factor 1-gamma-like.
    
  0.647
LOC115166697
Elongation factor 1-gamma.
    
  0.647
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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