Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115152308Transcription initiation factor TFIID subunit 4-like. (969 aa)    
Predicted Functional Partners:
LOC115168625
Transcription initiation factor TFIID subunit 13.
    
 0.975
ENSSTUP00000008919
annotation not available
    
 0.966
LOC115148989
Transcription initiation factor TFIID subunit 1-like.
    
 0.966
LOC115175265
Transcription initiation factor TFIID subunit 12-like.
    
 0.966
ENSSTUP00000106309
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.966
LOC115154403
Transcription initiation factor TFIID subunit 9-like.
    
 0.965
LOC115148947
Transcription initiation factor TFIID subunit 9-like.
    
 0.965
taf11
TATA-box binding protein associated factor 11.
    
 0.965
ENSSTUP00000087840
annotation not available
    
 0.965
ENSSTUP00000019828
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.964
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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