Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC115170558UV excision repair protein RAD23 homolog A-like. (353 aa)    
Predicted Functional Partners:
xpc
XPC complex subunit, DNA damage recognition and repair factor.
   
 0.978
ngly1
N-glycanase 1.
    
 0.978
ENSSTUP00000015333
Proteasome 26S subunit, non-ATPase 8.
   
 0.932
LOC115192953
DNA damage-binding protein 2-like.
   
 0.932
LOC115202194
DNA repair protein complementing XP-A cells homolog.
    
 0.924
ENSSTUP00000086066
annotation not available
    
 0.924
xpa
XPA, DNA damage recognition and repair factor.
    
 0.924
ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit.
    
 0.919
ENSSTUP00000091008
Excision repair cross-complementation group 2.
    
 0.919
gtf2h3
General transcription factor IIH subunit 3.
    
 0.917
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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