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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000010697annotation not available (636 aa)    
Predicted Functional Partners:
LOC115206143
E3 ubiquitin-protein ligase TRIP12-like.
   
    0.843
ENSSTUP00000075842
Thyroid hormone receptor interactor 12.
   
    0.843
ENSSTUP00000008587
Ataxin 2-like.
    
 
 0.716
LOC115192145
Ataxin-2-like protein.
    
 
 0.716
LOC115162349
Ataxin-2-like protein.
    
 
 0.716
ENSSTUP00000000531
Family with sequence similarity 98 member A.
    
 
 0.711
ENSSTUP00000082657
annotation not available
    
 
 0.711
LOC115205472
Synaptic functional regulator FMR1-like.
   
 
 0.677
LOC115175053
Synaptic functional regulator FMR1-like.
   
 
 0.677
LOC115167253
Ras GTPase-activating protein-binding protein 1-like.
    
 
 0.665
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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