STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115172082Echinoderm microtubule-associated protein-like 1. (314 aa)    
Predicted Functional Partners:
ift140
Intraflagellar transport 140.
    
 0.881
LOC115198132
Mitotic spindle assembly checkpoint protein MAD2A-like.
   
 0.848
LOC115194121
Mitotic spindle assembly checkpoint protein MAD2A-like.
   
 0.848
wdr35
WD repeat domain 35.
    
 0.843
LOC115153320
Anaphase-promoting complex subunit 1-like.
    
 0.842
LOC115168625
Transcription initiation factor TFIID subunit 13.
    
 0.837
sympk
Symplekin.
    
 0.835
ENSSTUP00000060160
Cleavage and polyadenylation specific factor 1.
   
 0.830
ENSSTUP00000111397
Cleavage and polyadenylation specific factor 1.
   
 0.830
ift57
Intraflagellar transport 57.
    
 0.821
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.