STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115152722E3 ubiquitin-protein ligase TRIM39-like. (473 aa)    
Predicted Functional Partners:
LOC115153309
ubiquitin-40S ribosomal protein S27a-like.
    
  0.530
rps27a
Ribosomal protein S27a.
    
  0.530
ENSSTUP00000056735
annotation not available
    
  0.530
ENSSTUP00000065171
annotation not available
    
  0.530
ENSSTUP00000082743
annotation not available
    
  0.530
ube2l3
Ubiquitin conjugating enzyme E2 L3.
    
  0.521
LOC115193571
AN1-type zinc finger protein 4-like.
    
  0.497
LOC115153369
AN1-type zinc finger protein 4-like.
    
  0.497
ENSSTUP00000001683
annotation not available
    
  0.482
LOC115169781
Ubiquitin-like protein FUBI.
    
  0.482
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.