Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115170821Major vault protein-like. (882 aa)    
Predicted Functional Partners:
parp4
poly(ADP-ribose) polymerase family member 4.
   
 
 0.977
cop1
COP1 E3 ubiquitin ligase.
    
   0.738
LOC115156993
E3 ubiquitin-protein ligase COP1-like.
    
   0.738
ENSSTUP00000035033
annotation not available
   
 
 0.734
parp1
poly(ADP-ribose) polymerase 1.
   
 
 0.734
utp25
UTP25 small subunit processor component.
    
   0.714
parp3
poly(ADP-ribose) polymerase family member 3.
   
 
 0.686
ENSSTUP00000077014
Poly (ADP-ribose) polymerase family, member 3.
   
 
 0.686
parp2
poly(ADP-ribose) polymerase 2.
   
 
 0.680
ENSSTUP00000037187
Von Willebrand factor A domain containing 5B2.
   
 
 0.680
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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