Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
parp4poly(ADP-ribose) polymerase family member 4. (2052 aa)    
Predicted Functional Partners:
LOC115170821
Major vault protein-like.
   
 
 0.977
MVP
Major vault protein.
   
 
 0.977
parp3
poly(ADP-ribose) polymerase family member 3.
     
 0.960
ENSSTUP00000077014
Poly (ADP-ribose) polymerase family, member 3.
     
 0.960
LOC115159896
poly(ADP-ribose) glycohydrolase-like.
    
 0.915
ENSSTUP00000109154
annotation not available
    
 0.915
LOC115201727
poly(ADP-ribose) glycohydrolase-like.
    
 0.915
ENSSTUP00000035033
annotation not available
     
 0.914
parp1
poly(ADP-ribose) polymerase 1.
     
 0.914
parp2
poly(ADP-ribose) polymerase 2.
     
 0.904
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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