Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000010940Cytosolic thiouridylase subunit 2 homolog (S. pombe). (487 aa)    
Predicted Functional Partners:
ctu1
Cytosolic thiouridylase subunit 1.
   
 0.973
pold2
DNA polymerase delta 2, accessory subunit.
   
 0.938
ENSSTUP00000035762
Glucan (1,4-alpha-), branching enzyme 1b.
   
 0.927
ENSSTUP00000039178
Glucan (1,4-alpha-), branching enzyme 1a.
   
 0.927
LOC115171852
Glycogen [starch] synthase, muscle-like.
   
 0.905
LOC115171852-2
Glycogen [starch] synthase, muscle-like.
   
 0.905
ENSSTUP00000105865
Glycogen synthase 2.
   
 0.905
ENSSTUP00000113497
Glycogen synthase 2.
   
 0.905
LOC115207651
DNA polymerase delta catalytic subunit-like.
    
 0.893
LOC115171850
DNA polymerase delta catalytic subunit-like.
    
 0.893
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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