Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000010958Proliferating cell nuclear antigen. (240 aa)    
Predicted Functional Partners:
rfc3
Replication factor C subunit 3.
  
 0.992
ENSSTUP00000074685
Ligase I, DNA, ATP-dependent.
   
 0.992
msh6
mutS homolog 6.
  
 0.990
RFC4
Replication factor C subunit 4.
  
 0.988
ENSSTUP00000108183
Replication factor C (activator 1) 4.
  
 0.988
LOC115192326
Growth arrest and DNA damage-inducible protein GADD45 alpha-like.
    
 0.987
pola1
DNA polymerase alpha 1, catalytic subunit.
  
 0.986
exo1
Exonuclease 1.
  
 0.984
mcm7
Minichromosome maintenance complex component 7.
   
 
 0.984
ENSSTUP00000001333
Flap structure-specific endonuclease 1.
  
 0.982
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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