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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAMP5Lysosome-associated membrane glycoprotein 5-like. (277 aa)    
Predicted Functional Partners:
depdc5
DEP domain containing 5, GATOR1 subcomplex subunit.
    
 
 0.697
ENSSTUP00000040931
WD repeat domain 59.
    
 
 0.697
NPRL2
GATOR complex protein NPRL2-like.
    
 
 0.662
LOC115150940
GATOR complex protein NPRL2.
    
 
 0.662
ENSSTUP00000021303
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 
 0.660
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 
 0.660
ENSSTUP00000050650
annotation not available
    
 
 0.657
rptor
Regulatory associated protein of MTOR complex 1.
    
 
 0.657
LOC115198922
GATOR complex protein NPRL3-like.
    
 
 0.648
LOC115171211
GATOR complex protein NPRL3-like.
    
 
 0.648
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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