Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LAMP5Lysosome-associated membrane glycoprotein 5-like. (277 aa)    
Predicted Functional Partners:
tmem72
Transmembrane protein 72.
      
 0.650
ENSSTUP00000047686
Potassium channel tetramerization domain containing 14.
      
 0.570
LOC115150216
T-cell surface glycoprotein CD8 alpha chain-like.
      
 0.542
ENSSTUP00000017974
Synuclein, gamma b (breast cancer-specific protein 1).
   
 
 0.534
SNCG
Synuclein-like.
   
 
 0.534
SNCG-2
Synuclein gamma.
   
 
 0.534
ENSSTUP00000092147
Synuclein, gamma b (breast cancer-specific protein 1).
   
 
 0.534
CEL
Bile salt-activated lipase-like.
      
 0.508
CEL-2
Bile salt-activated lipase-like.
      
 0.508
depdc5
DEP domain containing 5, GATOR1 subcomplex subunit.
    
   0.500
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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