Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115167478Coiled-coil domain-containing protein 102A-like. (599 aa)    
Predicted Functional Partners:
tmem129
Transmembrane protein 129.
      
 0.713
LOC115180019
Carbohydrate sulfotransferase 11.
      
 0.679
LOC115201434
Cdc42 effector protein 4-like.
      
 0.653
LOC115152879
Cdc42 effector protein 4-like.
      
 0.653
LOC115162290
Kinectin-like.
      
 0.636
ktn1
Kinectin 1.
      
 0.636
LOC115179378
Ribosome biogenesis protein BMS1 homolog.
      
 0.617
LOC115176672
Ribosome biogenesis protein BMS1 homolog.
      
 0.617
LOC115172924
Coiled-coil domain-containing protein 32-like.
      
 0.596
LOC115162641
Coiled-coil domain-containing protein 32-like.
      
 0.596
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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