Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
JPH3Junctophilin 3. (804 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
    
 0.755
nme8
NME/NM23 family member 8.
   
 
 0.692
LOC115155393
Thioredoxin domain-containing protein 3 homolog.
   
 
 0.692
LOC115199132
Leucine-rich repeat and guanylate kinase domain-containing protein-like.
    
 
 0.667
ENSSTUP00000113714
Leucine-rich repeats and guanylate kinase domain containing.
    
 
 0.667
dnali1
Dynein axonemal light intermediate chain 1.
   
 
 0.663
LOC115148794
Rab5 GDP/GTP exchange factor-like.
   
 0.655
LOC115154263
Rab5 GDP/GTP exchange factor-like.
   
 0.655
LOC115163280
Rab5 GDP/GTP exchange factor-like.
   
 0.655
LOC115206219
Rab5 GDP/GTP exchange factor-like.
   
 0.655
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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