Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC115182187tRNA selenocysteine 1-associated protein 1-like. (203 aa)    
Predicted Functional Partners:
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.708
LOC115165358
Small nuclear ribonucleoprotein G.
    
 0.703
LOC115171400
Nuclear cap-binding protein subunit 1.
    
 0.664
NCBP1
Nuclear cap-binding protein subunit 1-like.
    
 0.664
LOC115205223
Malate synthase-like.
    
  0.654
LOC115158477
Histone H2A deubiquitinase MYSM1-like.
    
 0.640
LOC115192420
Histone H2A deubiquitinase MYSM1-like.
    
 0.640
LOC115150656
Small nuclear ribonucleoprotein E.
   
 0.630
LOC115150656-2
Small nuclear ribonucleoprotein E.
   
 0.630
LOC115160908
Splicing factor 3B subunit 1.
    
 0.627
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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