LOC115154263 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC115154263

Rab5 GDP/GTP exchange factor-like. (505 aa)

Predicted Functional Partners:

LOC115160896

0.969

LOC115155571

0.969

LOC115154241

0.964

ENSSTUP00000071432

0.964

ENSSTUP00000008427

0.962

ENSSTUP00000078014

0.962

LOC115150454

0.960

LOC115200986

0.957

LOC115197954

0.957

LOC115173975

0.957

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSTUP00000008427	ENSSTUP00000071432	ENSSTUP00000008427	ENSSTUP00000071432	Rabaptin, RAB GTPase binding effector protein 2.	Rabaptin, RAB GTPase binding effector protein 1.	0.635
ENSSTUP00000008427	LOC115150454	ENSSTUP00000008427	ENSSTUP00000045944	Rabaptin, RAB GTPase binding effector protein 2.	Ras-related protein Rab-5B-like.	0.657
ENSSTUP00000008427	LOC115154241	ENSSTUP00000008427	ENSSTUP00000045674	Rabaptin, RAB GTPase binding effector protein 2.	Rab GTPase-binding effector protein 1-like.	0.635
ENSSTUP00000008427	LOC115154263	ENSSTUP00000008427	ENSSTUP00000011178	Rabaptin, RAB GTPase binding effector protein 2.	Rab5 GDP/GTP exchange factor-like.	0.962
ENSSTUP00000008427	LOC115155571	ENSSTUP00000008427	ENSSTUP00000026705	Rabaptin, RAB GTPase binding effector protein 2.	Ras-related protein Rab-5B-like.	0.657
ENSSTUP00000008427	LOC115160896	ENSSTUP00000008427	ENSSTUP00000025739	Rabaptin, RAB GTPase binding effector protein 2.	Ras-related protein Rab-5B-like.	0.657
ENSSTUP00000008427	LOC115173975	ENSSTUP00000008427	ENSSTUP00000049785	Rabaptin, RAB GTPase binding effector protein 2.	Ras-related protein Rab-5A.	0.657
ENSSTUP00000008427	LOC115197954	ENSSTUP00000008427	ENSSTUP00000046499	Rabaptin, RAB GTPase binding effector protein 2.	Ras-related protein Rab-5C-like.	0.657
ENSSTUP00000008427	LOC115200986	ENSSTUP00000008427	ENSSTUP00000015519	Rabaptin, RAB GTPase binding effector protein 2.	Ras-related protein Rab-5C-like.	0.657
ENSSTUP00000071432	ENSSTUP00000008427	ENSSTUP00000071432	ENSSTUP00000008427	Rabaptin, RAB GTPase binding effector protein 1.	Rabaptin, RAB GTPase binding effector protein 2.	0.635
ENSSTUP00000071432	ENSSTUP00000078014	ENSSTUP00000071432	ENSSTUP00000078014	Rabaptin, RAB GTPase binding effector protein 1.	annotation not available	0.635
ENSSTUP00000071432	LOC115150454	ENSSTUP00000071432	ENSSTUP00000045944	Rabaptin, RAB GTPase binding effector protein 1.	Ras-related protein Rab-5B-like.	0.836
ENSSTUP00000071432	LOC115154263	ENSSTUP00000071432	ENSSTUP00000011178	Rabaptin, RAB GTPase binding effector protein 1.	Rab5 GDP/GTP exchange factor-like.	0.964
ENSSTUP00000071432	LOC115155571	ENSSTUP00000071432	ENSSTUP00000026705	Rabaptin, RAB GTPase binding effector protein 1.	Ras-related protein Rab-5B-like.	0.836
ENSSTUP00000071432	LOC115160896	ENSSTUP00000071432	ENSSTUP00000025739	Rabaptin, RAB GTPase binding effector protein 1.	Ras-related protein Rab-5B-like.	0.836
ENSSTUP00000071432	LOC115173975	ENSSTUP00000071432	ENSSTUP00000049785	Rabaptin, RAB GTPase binding effector protein 1.	Ras-related protein Rab-5A.	0.836
ENSSTUP00000071432	LOC115197954	ENSSTUP00000071432	ENSSTUP00000046499	Rabaptin, RAB GTPase binding effector protein 1.	Ras-related protein Rab-5C-like.	0.836
ENSSTUP00000071432	LOC115200986	ENSSTUP00000071432	ENSSTUP00000015519	Rabaptin, RAB GTPase binding effector protein 1.	Ras-related protein Rab-5C-like.	0.836
ENSSTUP00000078014	ENSSTUP00000071432	ENSSTUP00000078014	ENSSTUP00000071432	annotation not available	Rabaptin, RAB GTPase binding effector protein 1.	0.635
ENSSTUP00000078014	LOC115150454	ENSSTUP00000078014	ENSSTUP00000045944	annotation not available	Ras-related protein Rab-5B-like.	0.657