Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115149206Serine/arginine-rich splicing factor 9-like. (266 aa)    
Predicted Functional Partners:
LOC115204692
Serine/arginine-rich splicing factor 1B-like.
   
  0.965
LOC115206340
Serine/arginine-rich splicing factor 1B-like.
   
  0.965
LOC115163421
Serine/arginine-rich splicing factor 1B.
   
  0.965
LOC115173964
Transformer-2 protein homolog alpha-like.
   
 0.951
LOC115179811
Transformer-2 protein homolog beta-like.
   
 0.951
LOC115175477
Transformer-2 protein homolog alpha-like.
   
 0.951
LOC115196146
Transformer-2 protein homolog beta-like.
   
 0.951
LOC115154147
Serine/arginine-rich splicing factor 7-like.
   
 0.937
LOC115148651
Serine/arginine-rich splicing factor 7-like.
   
 0.937
SRSF7
Serine/arginine-rich splicing factor 7-like.
   
 0.937
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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