STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115161420Indian hedgehog B protein-like. (419 aa)    
Predicted Functional Partners:
ENSSTUP00000002227
Hedgehog interacting protein.
    
 0.963
LOC115191786
Hedgehog-interacting protein-like.
    
 0.963
LOC115169769
Protein patched homolog 1-like.
   
 0.958
LOC115157002
Protein patched homolog 1.
   
 0.958
LOC115206727
Cell adhesion molecule-related/down-regulated by oncogenes-like.
    
 0.950
ENSSTUP00000036949
BOC cell adhesion associated, oncogene regulated.
    
 0.950
LOC115195479
Brother of CDO-like.
    
 0.950
PTCH1
Patched 1.
   
 0.927
LOC115200404
Protein patched homolog 1-like.
   
 0.927
ENSSTUP00000068317
annotation not available
   
 0.927
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.