Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115162279Photoreceptor outer segment membrane glycoprotein 2-like. (364 aa)    
Predicted Functional Partners:
RHO
Rhodopsin-like.
   
  
 0.779
LOC115150342
Green-sensitive opsin-2-like.
   
  
 0.764
ENSSTUP00000095560
annotation not available
   
  
 0.764
LOC115150344
Green-sensitive opsin-like.
   
  
 0.764
LOC115168451
Rhodopsin.
   
  
 0.743
ENSSTUP00000074349
annotation not available
   
  
 0.743
ENSSTUP00000102404
Rhodopsin, like.
   
  
 0.743
LOC115208131
Epiphycan-like.
   
  
 0.718
UBR1
Ubiquitin protein ligase E3 component n-recognin 1.
      
 0.699
LOC115190885
Transmembrane protein 179-like.
      
 0.694
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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