Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115192620Ornithine decarboxylase antizyme 1-like. (208 aa)    
Predicted Functional Partners:
LOC115162177
Ornithine decarboxylase 1-like.
    
 0.956
ODC1
Ornithine decarboxylase 1.
    
 0.956
AZIN1
Antizyme inhibitor 1-like.
    
 0.942
LOC115176411
Antizyme inhibitor 1-like.
    
 0.942
LOC115176239
Antizyme inhibitor 1-like.
    
 0.942
ENSSTUP00000011885
Ribosomal protein L27.
   
  
 0.775
LOC115171473
60S ribosomal protein L27.
   
  
 0.775
RPL19
60S ribosomal protein L19-like.
   
  
 0.759
RPL19-2
60S ribosomal protein L19.
   
  
 0.759
RPL19-3
60S ribosomal protein L19-like.
   
  
 0.759
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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