Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC115200070Probable cytosolic iron-sulfur protein assembly protein ciao1-A. (372 aa)    
Predicted Functional Partners:
LOC115201114
MMS19 nucleotide excision repair protein homolog.
    
 0.989
LOC115157635
MMS19 nucleotide excision repair protein homolog.
    
 0.989
LOC115202969
Cytosolic iron-sulfur assembly component 2B-like.
    
 0.987
ENSSTUP00000109544
Cytosolic iron-sulfur assembly component 2B.
    
 0.987
ENSSTUP00000064605
Cytosolic iron-sulfur assembly component 2A.
    
 0.986
ENSSTUP00000009556
Nuclear prelamin A recognition factor-like.
    
 0.926
LOC115156422
Nuclear prelamin A recognition factor-like.
    
 0.926
LOC115171679
Cytosolic Fe-S cluster assembly factor narfl-like.
    
 0.926
narf
Nuclear prelamin A recognition factor.
    
 0.926
ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit.
    
 0.922
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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