Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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[Homology]
Score
ENSSTUP00000011385Nuclear factor, interleukin 3 regulated, member 4. (366 aa)    
Predicted Functional Partners:
ENSSTUP00000041084
RAR-related orphan receptor B.
    
 0.874
LOC115199843
Nuclear receptor ROR-beta-like.
    
 0.874
LOC115176960
Ubiquitin-conjugating enzyme E2 E2.
   
 0.856
LOC115173781
Nuclear receptor subfamily 1 group D member 2-like.
   
 0.856
LOC115176961
Nuclear receptor subfamily 1 group D member 2-like.
   
 0.856
LOC115175689
Nuclear receptor subfamily 1 group D member 2-like.
   
 0.856
LOC115197076
Nuclear receptor subfamily 1 group D member 1-like.
   
 0.842
LOC115165523
Nuclear receptor subfamily 1 group D member 1-like.
   
 0.842
LOC115171023
Nuclear receptor subfamily 1 group D member 1-like.
   
 0.842
LOC115167862
Nuclear receptor subfamily 1 group D member 1-like.
   
 0.842
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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