Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM179Transmembrane protein 179-like. (233 aa)    
Predicted Functional Partners:
BCCIP
Protein BCCIP homolog.
      
 0.623
ENSSTUP00000104557
BRCA2 and CDKN1A interacting protein.
      
 0.623
LOC115162279
Photoreceptor outer segment membrane glycoprotein 2-like.
      
 0.578
LOC115172672
Signal recognition particle 14 kDa protein-like.
      
 0.575
ENSSTUP00000108104
annotation not available
      
 0.575
UBR1
Ubiquitin protein ligase E3 component n-recognin 1.
      
 0.574
LOC115174426
Photoreceptor outer segment membrane glycoprotein 2-like.
      
 0.563
TBC1D8
TBC1 domain family member 8-like.
      
 0.554
LOC115161020
TBC1 domain family member 8-like.
      
 0.554
LOC115179555
Mitotic-spindle organizing protein 1.
      
 0.551
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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