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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fastkd1FAST kinase domains 1. (880 aa)    
Predicted Functional Partners:
ptcd3
Pentatricopeptide repeat domain 3.
  
   
 0.635
tfb2m
Transcription factor B2, mitochondrial.
   
  
 0.560
fastkd2
FAST kinase domains 2.
      
 0.546
KDM1B
Lysine demethylase 1B.
      
 0.546
LOC115162073
Translational activator of cytochrome c oxidase 1.
      
 0.544
LRPPRC
Leucine rich pentatricopeptide repeat containing.
      
 0.542
ngrn
Neugrin, neurite outgrowth associated.
      
 0.540
ENSSTUP00000021567
TruB pseudouridine (psi) synthase family member 2.
      
 0.538
LOC115170161
Uncharacterized LOC115170161.
      
 0.538
LOC115150353
Mitochondrial mRNA pseudouridine synthase Trub2-like.
      
 0.538
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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