STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115173868T-cell leukemia homeobox protein 3-like. (278 aa)    
Predicted Functional Partners:
ARX
Aristaless-related homeobox protein-like.
    
 
0.640
LOC115195386
Aristaless-related homeobox protein-like.
    
 
0.640
LOC115204382
Aristaless-related homeobox protein-like.
    
 
0.640
arx
Aristaless related homeobox.
    
 
0.640
LOC115205465
Homeobox protein ARX-like.
    
 
0.622
tbx22
T-box transcription factor 22.
   
 
 0.475
fancm
FA complementation group M.
     
 0.430
lmo2
LIM domain only 2.
    
 
 0.410
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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