Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
LOC115176562Prenylated Rab acceptor protein 1-like. (204 aa)    
Predicted Functional Partners:
LOC115168286
E3 ubiquitin-protein transferase RMND5B-like.
   
 0.869
LOC115160893
Armadillo repeat-containing protein 8.
    
 0.869
ENSSTUP00000026302
Armadillo repeat containing 8.
    
 0.869
LOC115205615
E3 ubiquitin-protein transferase RMND5B-like.
   
 0.869
LOC115198873
Muskelin-like.
    
 0.861
ENSSTUP00000114424
Muskelin 1, intracellular mediator containing kelch motifs.
    
 0.861
LOC115205987
Protein YIF1B-like.
   
 
 0.845
LOC115163024
Protein YIF1B-like.
   
 
 0.845
LOC115172494
Protein YIF1A-like.
   
 
 0.845
LOC115205244
Protein YIF1A-like.
   
 
 0.845
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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