STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115176562Prenylated Rab acceptor protein 1-like. (204 aa)    
Predicted Functional Partners:
LOC115205987
Protein YIF1B-like.
   
 
 0.816
LOC115163024
Protein YIF1B-like.
   
 
 0.816
LOC115172494
Protein YIF1A-like.
   
 
 0.816
LOC115205244
Protein YIF1A-like.
   
 
 0.816
ENSSTUP00000005447
annotation not available
   
  
 0.756
LOC115158142
Coatomer subunit epsilon-like.
   
  
 0.756
LOC115160893
Armadillo repeat-containing protein 8.
    
 
 0.711
ENSSTUP00000026302
Armadillo repeat containing 8.
    
 
 0.711
ENSSTUP00000011695
Yip1 domain family, member 5.
    
 
 0.699
LOC115148515
Protein YIPF5.
    
 
 0.699
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.