Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000011523Ring finger protein 26. (449 aa)    
Predicted Functional Partners:
TMEM43
Transmembrane protein 43.
    
 
 0.840
LOC115167142
Toll-interacting protein-like.
    
 
 0.784
TOLLIP
Toll-interacting protein.
    
 
 0.784
ENSSTUP00000078948
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
    
 
 0.759
LOC115205559
Stimulator of interferon genes protein-like.
    
 
 0.725
ENSSTUP00000017561
Forkhead box R1.
    
 
 0.689
cuedc2
CUE domain containing 2.
    
   0.676
sqstm1
Sequestosome 1.
    
 
 0.674
LOC115171017
Sequestosome-1-like.
    
 
 0.674
upk2
Uroplakin 2.
      
 0.673
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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