Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000011565Si:ch73-238c9.1. (189 aa)    
Predicted Functional Partners:
ENSSTUP00000077080
annotation not available
    
 
 0.893
LOC115188390
RAD50-interacting protein 1-like.
    
 
 0.893
use1
Unconventional SNARE in the ER 1.
    
   0.854
ENSSTUP00000071612
annotation not available
    
 
 0.834
SCFD2
Sec1 family domain-containing protein 2-like.
    
 
 0.828
SCFD2-2
Sec1 family domain-containing protein 2-like.
    
 
 0.828
ENSSTUP00000035059
Zw10 kinetochore protein.
    
 
 0.809
LOC115148700
Centromere/kinetochore protein zw10 homolog.
    
 
 0.809
LOC115162096
Sec1 family domain-containing protein 1-like.
    
 
 0.760
scfd1
Sec1 family domain containing 1.
    
 
 0.760
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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