Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115153974Cornifelin homolog A-like. (302 aa)    
Predicted Functional Partners:
rnpc3
RNA binding region (RNP1, RRM) containing 3.
      
 0.688
LOC115158477
Histone H2A deubiquitinase MYSM1-like.
    
  0.663
LOC115192420
Histone H2A deubiquitinase MYSM1-like.
    
  0.663
rpl9
Ribosomal protein L9.
    
  0.612
med1
Mediator complex subunit 1.
    
  0.612
LOC115164667
Anaphase-promoting complex subunit 7-like.
      
 0.611
LOC115199747
Cotranscriptional regulator FAM172A homolog.
      
 0.571
ENSSTUP00000083885
Si:ch73-41e3.7.
      
 0.571
LOC115181187
Cotranscriptional regulator FAM172A homolog.
      
 0.571
FAM172A
Cotranscriptional regulator FAM172A homolog.
      
 0.571
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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