Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115151645GTP-binding protein Di-Ras1. (198 aa)    
Predicted Functional Partners:
LOC115205100
Rap guanine nucleotide exchange factor 2-like.
    
 0.928
afdn
Afadin, adherens junction formation factor.
    
 0.842
AFDN
Afadin, adherens junction formation factor.
    
 0.842
LOC115156011
Rap guanine nucleotide exchange factor 4-like.
   
 0.828
LOC115157370
Rap guanine nucleotide exchange factor 4-like.
   
 0.828
ENSSTUP00000090378
Zgc:171558.
   
 0.828
ENSSTUP00000091806
Rap guanine nucleotide exchange factor (GEF) 4.
   
 0.828
LOC115198276
RING finger protein 227-like.
   
 0.818
ENSSTUP00000077925
ralA binding protein 1.
    
 0.815
LOC115175796
Krev interaction trapped protein 1-like.
    
 0.780
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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