Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115151646Growth arrest and DNA damage-inducible protein GADD45 beta-like. (160 aa)    
Predicted Functional Partners:
ENSSTUP00000044418
annotation not available
    
 0.956
map3k4
Mitogen-activated protein kinase kinase kinase 4.
    
 0.956
ENSSTUP00000010958
Proliferating cell nuclear antigen.
    
  0.914
ENSSTUP00000019540
annotation not available
    
  0.914
PCNA
Proliferating cell nuclear antigen.
    
  0.914
LOC115200315
Proliferating cell nuclear antigen-like.
    
  0.914
LOC115192326
Growth arrest and DNA damage-inducible protein GADD45 alpha-like.
   
  0.900
LOC115204480
G2/mitotic-specific cyclin-B3-like.
    
 0.899
LOC115190418
G2/mitotic-specific cyclin-B3-like.
    
 0.899
LOC115193676
Cyclin-dependent kinase 1.
    
  0.893
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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