Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000011641Desmin a. (455 aa)    
Predicted Functional Partners:
LOC115174683
Glial fibrillary acidic protein-like.
     
  0.807
ENSSTUP00000008412
Vimentin-related 2.
    
  0.786
ENSSTUP00000088308
annotation not available
    
 
 0.775
ENSSTUP00000109468
annotation not available
    
 
 0.775
vim
Vimentin.
     
  0.753
LOC115170256
Vimentin A2-like.
     
  0.753
ENSSTUP00000002076
Notochord granular surface.
    
  0.703
ENSSTUP00000053229
annotation not available
    
  0.660
LOC115168461
RNA-binding protein 39-like.
    
 0.613
LOC115182932
Inner nuclear membrane protein Man1-like.
    
 0.613
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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