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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115159216Solute carrier family 25 member 46. (406 aa)    
Predicted Functional Partners:
OPA1
Dynamin-like 120 kDa protein, mitochondrial.
   
 
 0.510
LOC115151541
Dynamin-like 120 kDa protein, mitochondrial.
   
 
 0.510
mfn2
Mitofusin 2.
   
 
 0.496
LOC115151529
Mitofusin-1-like.
   
 
 0.496
MFN1
Mitofusin-1-like.
   
 
 0.496
ENSSTUP00000081480
annotation not available
   
 
 0.496
opa3
Outer mitochondrial membrane lipid metabolism regulator OPA3.
      
 0.430
LOC115203913
E3 ubiquitin-protein ligase MARCH5-like.
   
 
 0.416
ENSSTUP00000017340
Membrane-associated ring finger (C3HC4) 5.
   
 
 0.416
LOC115153040
E3 ubiquitin-protein ligase MARCH5.
   
 
 0.416
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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