DENND4A-2 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DENND4A-2

C-myc promoter-binding protein-like. (2020 aa)

Predicted Functional Partners:

ENSSTUP00000012564

0.616

ENSSTUP00000025601

0.616

LOC115154876

0.614

RAB10

0.569

rab10

0.569

ENSSTUP00000000882

0.563

LOC115151755

0.563

LOC115150659

0.563

LOC115155510

0.563

LOC115195532

0.563

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DENND4A-2	ENSSTUP00000000882	ENSSTUP00000011655	ENSSTUP00000000882	C-myc promoter-binding protein-like.	GRB2 associated, regulator of MAPK1-like.	0.563
DENND4A-2	ENSSTUP00000012564	ENSSTUP00000011655	ENSSTUP00000012564	C-myc promoter-binding protein-like.	MAP-kinase activating death domain.	0.616
DENND4A-2	ENSSTUP00000025601	ENSSTUP00000011655	ENSSTUP00000025601	C-myc promoter-binding protein-like.	MAP-kinase activating death domain.	0.616
DENND4A-2	LOC115150659	ENSSTUP00000011655	ENSSTUP00000018699	C-myc promoter-binding protein-like.	GRB2-associated and regulator of MAPK protein 1-like.	0.563
DENND4A-2	LOC115151755	ENSSTUP00000011655	ENSSTUP00000014448	C-myc promoter-binding protein-like.	Ras-related protein Rab-8A-like.	0.563
DENND4A-2	LOC115154876	ENSSTUP00000011655	ENSSTUP00000084119	C-myc promoter-binding protein-like.	Rab proteins geranylgeranyltransferase component A 2-like.	0.614
DENND4A-2	LOC115155510	ENSSTUP00000011655	ENSSTUP00000029888	C-myc promoter-binding protein-like.	Ras-related protein Rab-15-like.	0.563
DENND4A-2	LOC115195532	ENSSTUP00000011655	ENSSTUP00000030339	C-myc promoter-binding protein-like.	GRB2-associated and regulator of MAPK protein 1-like.	0.563
DENND4A-2	RAB10	ENSSTUP00000011655	ENSSTUP00000000896	C-myc promoter-binding protein-like.	Ras-related protein Rab-10.	0.569
DENND4A-2	rab10	ENSSTUP00000011655	ENSSTUP00000056701	C-myc promoter-binding protein-like.	Ras-related protein Rab-10.	0.569
ENSSTUP00000000882	DENND4A-2	ENSSTUP00000000882	ENSSTUP00000011655	GRB2 associated, regulator of MAPK1-like.	C-myc promoter-binding protein-like.	0.563
ENSSTUP00000000882	LOC115154876	ENSSTUP00000000882	ENSSTUP00000084119	GRB2 associated, regulator of MAPK1-like.	Rab proteins geranylgeranyltransferase component A 2-like.	0.758
ENSSTUP00000012564	DENND4A-2	ENSSTUP00000012564	ENSSTUP00000011655	MAP-kinase activating death domain.	C-myc promoter-binding protein-like.	0.616
ENSSTUP00000012564	LOC115154876	ENSSTUP00000012564	ENSSTUP00000084119	MAP-kinase activating death domain.	Rab proteins geranylgeranyltransferase component A 2-like.	0.788
ENSSTUP00000025601	DENND4A-2	ENSSTUP00000025601	ENSSTUP00000011655	MAP-kinase activating death domain.	C-myc promoter-binding protein-like.	0.616
ENSSTUP00000025601	LOC115154876	ENSSTUP00000025601	ENSSTUP00000084119	MAP-kinase activating death domain.	Rab proteins geranylgeranyltransferase component A 2-like.	0.788
LOC115150659	DENND4A-2	ENSSTUP00000018699	ENSSTUP00000011655	GRB2-associated and regulator of MAPK protein 1-like.	C-myc promoter-binding protein-like.	0.563
LOC115150659	LOC115154876	ENSSTUP00000018699	ENSSTUP00000084119	GRB2-associated and regulator of MAPK protein 1-like.	Rab proteins geranylgeranyltransferase component A 2-like.	0.758
LOC115151755	DENND4A-2	ENSSTUP00000014448	ENSSTUP00000011655	Ras-related protein Rab-8A-like.	C-myc promoter-binding protein-like.	0.563
LOC115151755	LOC115154876	ENSSTUP00000014448	ENSSTUP00000084119	Ras-related protein Rab-8A-like.	Rab proteins geranylgeranyltransferase component A 2-like.	0.770