Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115200836ORM1-like protein 3. (186 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase long chain base subunit 1.
    
 
 0.876
ENSSTUP00000009895
Serine palmitoyltransferase, small subunit A.
    
 
 0.803
ENSSTUP00000050353
annotation not available
    
 
 0.803
pigo
Phosphatidylinositol glycan anchor biosynthesis class O.
    
 
 0.673
ENSSTUP00000034546
annotation not available
    
 
 0.651
LOC115176416
Phosphatidylinositide phosphatase SAC1-B.
    
 
 0.651
ENSSTUP00000064381
SAC1 like phosphatidylinositide phosphatase b.
    
 
 0.651
ENSSTUP00000099277
annotation not available
    
 
 0.651
ENSSTUP00000049610
Isthmin 2a.
    
 
 0.642
LOC115172199
Serine palmitoyltransferase 2-like.
    
 
 0.642
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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