Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115205732Neuronal pentraxin-2-like. (450 aa)    
Predicted Functional Partners:
ENSSTUP00000015486
Ring finger protein 2.
    
 0.731
LOC115170243
E3 ubiquitin-protein ligase RING2-like.
    
 0.731
LOC115175903
E3 ubiquitin-protein ligase RING2-A-like.
    
 0.731
RING1
E3 ubiquitin-protein ligase RING2-A-like.
    
 0.731
TAFA5
Chemokine-like protein TAFA-5.
      
 0.685
EED
Polycomb protein eed-like.
    
 0.664
LOC115179867
Polycomb protein eed-like.
    
 0.664
LOC115196255
Parvalbumin-7-like.
     
 0.617
LOC115170914
Parvalbumin-7-like.
     
 0.617
GRIA2
Glutamate receptor 2.
    
 
 0.597
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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