STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115202802AN1-type zinc finger protein 3-like. (226 aa)    
Predicted Functional Partners:
ENSSTUP00000008427
Rabaptin, RAB GTPase binding effector protein 2.
    
 0.849
LOC115154241
Rab GTPase-binding effector protein 1-like.
    
 0.849
ENSSTUP00000071432
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.849
ENSSTUP00000078014
annotation not available
    
 0.849
ENSSTUP00000013151
annotation not available
    
 0.687
LOC115156752
ubiquitin-60S ribosomal protein L40-like.
    
 0.687
ENSSTUP00000101776
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.687
LOC115156752-2
ubiquitin-60S ribosomal protein L40-like.
    
 0.687
LOC115153309
ubiquitin-40S ribosomal protein S27a-like.
    
  0.664
rps27a
Ribosomal protein S27a.
    
  0.664
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.