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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL26A1-2Collagen alpha-1(XXVI) chain-like. (445 aa)    
Predicted Functional Partners:
LOC115204700
Complement C1q subcomponent subunit C-like.
   
  0.637
ENSSTUP00000076300
SPT3 homolog, SAGA and STAGA complex component.
    
  0.597
ENSSTUP00000101080
annotation not available
  
 
  0.591
LOC115197322
Furin-like.
    
  0.570
LOC115151698
Proprotein convertase subtilisin/kexin type 4-like.
    
  0.570
ENSSTUP00000044473
Furin (paired basic amino acid cleaving enzyme) a.
    
  0.570
furin
Furin, paired basic amino acid cleaving enzyme.
    
  0.570
LOC115203143
Furin-1-like.
    
  0.570
ENSSTUP00000004966
annotation not available
  
 
  0.555
LOC115175265
Transcription initiation factor TFIID subunit 12-like.
    
 0.536
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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