Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yipf1Yip1 domain family member 1. (310 aa)    
Predicted Functional Partners:
LOC115149082
Protein YIPF6-like.
   
 
 0.932
ENSSTUP00000083976
Yip1 domain family, member 6.
   
 
 0.932
ENSSTUP00000005721
Yip1 domain family, member 4.
   
 
 0.886
LOC115153170
Protein YIPF4.
   
 
 0.886
ENSSTUP00000011695
Yip1 domain family, member 5.
   
 
 0.783
LOC115148515
Protein YIPF5.
   
 
 0.783
LOC115162179
Protein YIPF7-like.
   
 
 0.783
ENSSTUP00000078968
annotation not available
   
 
 0.783
LOC115205987
Protein YIF1B-like.
   
  
 0.775
LOC115163024
Protein YIF1B-like.
   
  
 0.775
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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