Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rereArginine-glutamic acid dipeptide repeats. (1572 aa)    
Predicted Functional Partners:
LOC115167276
Protocadherin Fat 2-like.
    
 0.856
LOC115205717
Protocadherin Fat 2-like.
    
 0.856
FAT1
Protocadherin Fat 1-like.
    
 0.851
ENSSTUP00000087935
FAT atypical cadherin 1b.
    
 0.851
LOC115191906
Protocadherin Fat 1-like.
    
 0.851
NR2E3
Nuclear receptor subfamily 2 group E member 3.
    
 0.842
LOC115166736
Photoreceptor-specific nuclear receptor-like.
    
 0.842
LOC115176185
Nuclear receptor subfamily 2 group E member 1.
    
 0.842
LOC115174384
Nuclear receptor subfamily 2 group E member 1-like.
    
 0.842
ENSSTUP00000005444
Recombination signal binding protein for immunoglobulin kappa J region b.
    
  0.834
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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