ENSSTUP00000012122 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSTUP00000012122

annotation not available (358 aa)

Predicted Functional Partners:

LOC115168031

0.718

LOC115165686

0.718

ENSSTUP00000114788

0.718

timp4

0.706

LOC115192191

0.666

pla2g4a

0.666

LOC115169910

0.666

ARMC6

0.615

sergef

0.587

LOC115179848

0.560

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARMC6	ENSSTUP00000012122	ENSSTUP00000097850	ENSSTUP00000012122	Armadillo repeat containing 6.	annotation not available	0.615
ENSSTUP00000012122	ARMC6	ENSSTUP00000012122	ENSSTUP00000097850	annotation not available	Armadillo repeat containing 6.	0.615
ENSSTUP00000012122	ENSSTUP00000114788	ENSSTUP00000012122	ENSSTUP00000114788	annotation not available	Ubiquitin-conjugating enzyme E2 variant 1.	0.718
ENSSTUP00000012122	LOC115165686	ENSSTUP00000012122	ENSSTUP00000024529	annotation not available	Ubiquitin-conjugating enzyme E2 variant 1.	0.718
ENSSTUP00000012122	LOC115168031	ENSSTUP00000012122	ENSSTUP00000022347	annotation not available	Ubiquitin-conjugating enzyme E2 variant 1.	0.718
ENSSTUP00000012122	LOC115169910	ENSSTUP00000012122	ENSSTUP00000098551	annotation not available	Cytosolic phospholipase A2-like.	0.666
ENSSTUP00000012122	LOC115179848	ENSSTUP00000012122	ENSSTUP00000105456	annotation not available	Hemopexin-like.	0.560
ENSSTUP00000012122	LOC115192191	ENSSTUP00000012122	ENSSTUP00000005035	annotation not available	Cytosolic phospholipase A2-like.	0.666
ENSSTUP00000012122	pla2g4a	ENSSTUP00000012122	ENSSTUP00000052085	annotation not available	Phospholipase A2 group IVA.	0.666
ENSSTUP00000012122	sergef	ENSSTUP00000012122	ENSSTUP00000012599	annotation not available	Secretion regulating guanine nucleotide exchange factor.	0.587
ENSSTUP00000012122	timp4	ENSSTUP00000012122	ENSSTUP00000007138	annotation not available	TIMP metallopeptidase inhibitor 4.	0.706
ENSSTUP00000114788	ENSSTUP00000012122	ENSSTUP00000114788	ENSSTUP00000012122	Ubiquitin-conjugating enzyme E2 variant 1.	annotation not available	0.718
ENSSTUP00000114788	LOC115165686	ENSSTUP00000114788	ENSSTUP00000024529	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin-conjugating enzyme E2 variant 1.	0.978
ENSSTUP00000114788	LOC115168031	ENSSTUP00000114788	ENSSTUP00000022347	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin-conjugating enzyme E2 variant 1.	0.978
ENSSTUP00000114788	LOC115169910	ENSSTUP00000114788	ENSSTUP00000098551	Ubiquitin-conjugating enzyme E2 variant 1.	Cytosolic phospholipase A2-like.	0.875
ENSSTUP00000114788	LOC115179848	ENSSTUP00000114788	ENSSTUP00000105456	Ubiquitin-conjugating enzyme E2 variant 1.	Hemopexin-like.	0.718
ENSSTUP00000114788	LOC115192191	ENSSTUP00000114788	ENSSTUP00000005035	Ubiquitin-conjugating enzyme E2 variant 1.	Cytosolic phospholipase A2-like.	0.875
ENSSTUP00000114788	pla2g4a	ENSSTUP00000114788	ENSSTUP00000052085	Ubiquitin-conjugating enzyme E2 variant 1.	Phospholipase A2 group IVA.	0.875
LOC115165686	ENSSTUP00000012122	ENSSTUP00000024529	ENSSTUP00000012122	Ubiquitin-conjugating enzyme E2 variant 1.	annotation not available	0.718
LOC115165686	ENSSTUP00000114788	ENSSTUP00000024529	ENSSTUP00000114788	Ubiquitin-conjugating enzyme E2 variant 1.	Ubiquitin-conjugating enzyme E2 variant 1.	0.978