Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000012123SPT5 homolog, DSIF elongation factor subunit. (1090 aa)    
Predicted Functional Partners:
ENSSTUP00000038680
annotation not available
    
 0.996
cdk9
Cyclin dependent kinase 9.
    
 0.996
supt4h1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.996
rnmt
RNA guanine-7 methyltransferase.
    
 0.987
polr2h
RNA polymerase II subunit H.
    
 0.984
ENSSTUP00000070694
Polymerase (RNA) II (DNA directed) polypeptide I.
    
 0.982
POLR2B
DNA-directed RNA polymerase II subunit RPB2.
   
 0.980
POLR2B-2
DNA-directed RNA polymerase II subunit RPB2-like.
   
 0.980
LOC115198172
DNA-directed RNA polymerase II subunit RPB1.
   
 0.977
LOC115194168
DNA-directed RNA polymerase II subunit RPB1-like.
   
 0.977
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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