Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115179202Probable C-mannosyltransferase DPY19L1. (744 aa)    
Predicted Functional Partners:
ccdc62
Coiled-coil domain containing 62.
      
 0.682
ccdc152
Coiled-coil domain containing 152.
      
 0.648
tsr3
TSR3 ribosome maturation factor.
      
 0.645
LOC115206720
Protein piccolo-like.
      
 0.644
tsr2
TSR2 ribosome maturation factor.
      
 0.636
ccdc125
Coiled-coil domain containing 125.
      
 0.632
SPATA16
Spermatogenesis associated 16.
   
  
 0.620
ENSSTUP00000088026
Unc-5 netrin receptor A.
    
 
 0.613
ENSSTUP00000085273
5'-nucleotidase domain containing 1.
      
 0.586
ENSSTUP00000092088
5'-nucleotidase domain containing 1.
      
 0.586
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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