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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115170552Phospholipid phosphatase-related protein type 5-like. (338 aa)    
Predicted Functional Partners:
med6
Mediator complex subunit 6.
    
 0.921
med23
Mediator complex subunit 23.
    
 0.912
ENSSTUP00000046446
Mediator complex subunit 31.
    
 0.907
med1
Mediator complex subunit 1.
   
 0.904
ENSSTUP00000040632
Epoxide hydrolase 2, cytoplasmic.
    
 0.882
ENSSTUP00000051424
Epoxide hydrolase 2, cytoplasmic.
    
 0.882
ENSSTUP00000028936
annotation not available
    
 0.879
med10
Mediator of RNA polymerase II transcription subunit 10.
    
 0.879
LOC115206501
Mediator of RNA polymerase II transcription subunit 17.
    
 0.879
LOC115175636
Mediator of RNA polymerase II transcription subunit 10.
    
 0.879
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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