Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC115151653Mediator of RNA polymerase II transcription subunit 16-like. (837 aa)    
Predicted Functional Partners:
med1
Mediator complex subunit 1.
   
 0.979
med23
Mediator complex subunit 23.
   
 0.978
MED14
Mediator of RNA polymerase II transcription subunit 14-like.
   
 0.972
LOC115155908
Mediator of RNA polymerase II transcription subunit 14-like.
   
 0.972
ENSSTUP00000028936
annotation not available
    
 0.971
LOC115206501
Mediator of RNA polymerase II transcription subunit 17.
    
 0.971
ENSSTUP00000022935
Mediator complex subunit 27.
   
 0.966
med6
Mediator complex subunit 6.
    
 0.966
LOC115164880
Mediator of RNA polymerase II transcription subunit 27.
   
 0.966
MED4
Mediator of RNA polymerase II transcription subunit 4.
    
 0.961
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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