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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115170118Zinc finger protein 160-like. (1098 aa)    
Predicted Functional Partners:
ENSSTUP00000023803
Adenylate kinase 9.
    
  0.594
LOC115155632
BRCA1-associated RING domain protein 1-like.
    
  0.562
LOC115166015
Uncharacterized LOC115166015.
  
 
  0.547
LOC115171505
Uncharacterized LOC115171505.
  
 
  0.537
LOC115203709
Uncharacterized LOC115203709.
  
 
  0.535
mrps6
Mitochondrial ribosomal protein S6.
    
  0.535
ENSSTUP00000088155
Mitochondrial ribosomal protein S28.
    
  0.535
mrps25
Mitochondrial ribosomal protein S25.
    
  0.534
mrps14
Mitochondrial ribosomal protein S14.
    
  0.534
ENSSTUP00000053802
Mitochondrial ribosomal protein S10.
    
  0.534
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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