Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSTUP00000012249annotation not available (663 aa)    
Predicted Functional Partners:
ENSSTUP00000103851
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
    
   0.746
LOC115170006
Transcription initiation factor IIB.
    
   0.598
LOC115156696
Transcription initiation factor IIB-like.
    
   0.598
LOC115191612
CSC1-like protein 1.
     
 0.529
LOC115205998
Potassium channel subfamily K member 6-like.
      
 0.494
kcnk6
Potassium two pore domain channel subfamily K member 6.
      
 0.494
FAM20A
Pseudokinase FAM20A-like.
     
  0.458
FAM20A-2
Pseudokinase FAM20A-like.
     
  0.458
LOC115205973
Sodium channel subunit beta-4-like.
      
 0.457
LOC115163013
Sodium channel subunit beta-4-like.
      
 0.457
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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