Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSSTUP00000012284Protein tyrosine phosphatase receptor type Fa. (1814 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1.
    
 0.923
CTNNB1-2
Catenin beta-1-like.
    
 0.923
LOC115205813
Interleukin-1 receptor accessory protein-like.
    
 0.898
SLITRK1
SLIT and NTRK-like protein 1.
    
 0.895
SLITRK1-2
SLIT and NTRK-like protein 1.
    
 0.895
LOC115205474
SLIT and NTRK-like protein 2.
    
 0.889
ENSSTUP00000100372
SLIT and NTRK-like family, member 2.
    
 0.889
irs1
Insulin receptor substrate 1.
    
  0.886
LOC115200964
Leucine-rich repeat-containing protein 4B-like.
    
 0.855
LOC115171492
Leucine-rich repeat-containing protein 4B-like.
    
 0.855
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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