ENSSTUP00000012289 protein (Salmo trutta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSTUP00000012289

Transient receptor potential cation channel, subfamily C, member 6b. (840 aa)

Predicted Functional Partners:

trpc1

0.855

ENSSTUP00000003786

0.719

PRKCB

0.719

LOC115182231

0.719

ENSSTUP00000073875

0.719

PRKCA

0.719

ENSSTUP00000094359

0.719

ENSSTUP00000094403

0.719

lnx1

0.688

LOC115158526

0.688

Your Current Organism:

Salmo trutta

NCBI taxonomy Id: 8032
Other names: S. trutta, river trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSTUP00000003786	ENSSTUP00000012289	ENSSTUP00000003786	ENSSTUP00000012289	Protein kinase C, alpha, b.	Transient receptor potential cation channel, subfamily C, member 6b.	0.719
ENSSTUP00000003786	LOC115158526	ENSSTUP00000003786	ENSSTUP00000019795	Protein kinase C, alpha, b.	E3 ubiquitin-protein ligase LNX-like.	0.741
ENSSTUP00000003786	lnx1	ENSSTUP00000003786	ENSSTUP00000012625	Protein kinase C, alpha, b.	Ligand of numb-protein X 1.	0.741
ENSSTUP00000003786	trpc1	ENSSTUP00000003786	ENSSTUP00000002664	Protein kinase C, alpha, b.	Transient receptor potential cation channel subfamily C member 1.	0.674
ENSSTUP00000012289	ENSSTUP00000003786	ENSSTUP00000012289	ENSSTUP00000003786	Transient receptor potential cation channel, subfamily C, member 6b.	Protein kinase C, alpha, b.	0.719
ENSSTUP00000012289	ENSSTUP00000073875	ENSSTUP00000012289	ENSSTUP00000073875	Transient receptor potential cation channel, subfamily C, member 6b.	Protein kinase C, alpha, a.	0.719
ENSSTUP00000012289	ENSSTUP00000094359	ENSSTUP00000012289	ENSSTUP00000094359	Transient receptor potential cation channel, subfamily C, member 6b.	Protein kinase C, alpha, b.	0.719
ENSSTUP00000012289	ENSSTUP00000094403	ENSSTUP00000012289	ENSSTUP00000094403	Transient receptor potential cation channel, subfamily C, member 6b.	annotation not available	0.719
ENSSTUP00000012289	LOC115158526	ENSSTUP00000012289	ENSSTUP00000019795	Transient receptor potential cation channel, subfamily C, member 6b.	E3 ubiquitin-protein ligase LNX-like.	0.688
ENSSTUP00000012289	LOC115182231	ENSSTUP00000012289	ENSSTUP00000063566	Transient receptor potential cation channel, subfamily C, member 6b.	Protein kinase C beta type.	0.719
ENSSTUP00000012289	PRKCA	ENSSTUP00000012289	ENSSTUP00000075173	Transient receptor potential cation channel, subfamily C, member 6b.	Protein kinase C alpha type.	0.719
ENSSTUP00000012289	PRKCB	ENSSTUP00000012289	ENSSTUP00000053307	Transient receptor potential cation channel, subfamily C, member 6b.	Protein kinase C beta.	0.719
ENSSTUP00000012289	lnx1	ENSSTUP00000012289	ENSSTUP00000012625	Transient receptor potential cation channel, subfamily C, member 6b.	Ligand of numb-protein X 1.	0.688
ENSSTUP00000012289	trpc1	ENSSTUP00000012289	ENSSTUP00000002664	Transient receptor potential cation channel, subfamily C, member 6b.	Transient receptor potential cation channel subfamily C member 1.	0.855
ENSSTUP00000073875	ENSSTUP00000012289	ENSSTUP00000073875	ENSSTUP00000012289	Protein kinase C, alpha, a.	Transient receptor potential cation channel, subfamily C, member 6b.	0.719
ENSSTUP00000073875	LOC115158526	ENSSTUP00000073875	ENSSTUP00000019795	Protein kinase C, alpha, a.	E3 ubiquitin-protein ligase LNX-like.	0.741
ENSSTUP00000073875	lnx1	ENSSTUP00000073875	ENSSTUP00000012625	Protein kinase C, alpha, a.	Ligand of numb-protein X 1.	0.741
ENSSTUP00000073875	trpc1	ENSSTUP00000073875	ENSSTUP00000002664	Protein kinase C, alpha, a.	Transient receptor potential cation channel subfamily C member 1.	0.674
ENSSTUP00000094359	ENSSTUP00000012289	ENSSTUP00000094359	ENSSTUP00000012289	Protein kinase C, alpha, b.	Transient receptor potential cation channel, subfamily C, member 6b.	0.719
ENSSTUP00000094359	LOC115158526	ENSSTUP00000094359	ENSSTUP00000019795	Protein kinase C, alpha, b.	E3 ubiquitin-protein ligase LNX-like.	0.741